> -20 agents MIA??! Wow. Tony is handled well in his other title guest appearances and usually in control. But is he really less in control than other places. He seems in character but his SHIELD is falling apart in this title

Well, Faustus had infiltrated SHIELD quite a while before Tony took over so you can't really blame him for this. Its not like he can walk in a room and sense that someone's been brainwashed. He's doing a pretty good job of reacting to this, IMO.